常用的生物信息学网址大全.docx
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常用的生物信息学网址大全.docx
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常用的生物信息学网址大全
常用的生物信息学网址大全,非常全面
时间:
2006-12-2613:
42:
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3398
用生物信息学数据库和分析工具网址
数据库
因特网网址
网上生物信息学教程 EMBLbiocomputingtutorials
http:
//www.bio.cam.ac.uk/Embnetut/Gcg/index.htmlPlantgenomedababasetutorial
http:
//www.nal.usda.gov/pgdic
生物信息学机构
NCBI
http:
//www.ncbi.nlm.nih.gov/
InternationalNucleotideSequenceDatabaseCollaboration.
http:
//www.ncbi.nlm.nih.gov/collab/EBI
http:
//www.ebi.ac.uk/USDA
http:
//www.nal.usda.gov/SangerCentre
http:
//genomic.sanger.ac.uk/北京大学生物信息学中心
数据库信息发布及其它
GenBankReleaseNotes
ftp:
//ncbi.nlm.nih.gov/genbank/gbrel.txt
dbESTsummaryreport
http:
//www.ncbi.nlm.nih.gov/dbEST/dbESTsummarv.html
EMBLreleasenotes
http:
//www.genome.ad.jp/dbget-bin/showman?
embl
DDBJreleasenotes
http:
//www.ddbj.nig.ac.jp/ddbjnew/ddbjrelnote.html
Eukaryoticpromoterdatabasereleasenotes
http:
//www.genome.ad.jp/dbget/dbget2.html
SwissProtreleasenotes
http:
//www.genome.ad.jp/dbget-bin/showman?
swissprot
PIRreleasenotes
http:
//www.genome.ad.jp/dbget-bin/showman?
pir
PRFreleasenotes
http:
//www.genome.ad.jp/dbget-bin/showman?
prf
PDBSTRreleasenotes
http:
//www.genome.ad.jp/dbget-bin/showman?
pdbstr
Prositereleasenotes
http:
//www.genome.ad.jp/dbget-bin/showman?
prosite
PDBreleasenotes
http:
//www.genome.ad.jp/dbget-bin/showman?
pdb
KEGGreleasenotes
http:
//www.genome.ad.jp/dbget-bin/showman?
pathway
核苷酸数据库
GenBank
http:
//www.ncbi.nlm.nih.gov/
dbEST
http:
//www.ncbi.nlm.nih.gov/dbEST/index.html
dbSTS
http:
//www.ncbi.nlm.nih.gov/dbSTS/index.htmldbGSS
http:
//www2.ncbi.nlm.nih.gov/dbGSS/index.html
Genome(NCBI)
http:
//www.ncbi.nlm.nih.gov/Entrez/Genome/org.html
dbSNP
http:
//www.ncbi.nlm.nih.gov/SNP/
HTGS
http:
//www.ncbi.nlm.nih.gov/HTGS/
UniGene
http:
//www.ncbi.nlm.nih.gov/UniGene/EMBL核苷酸数据库
http:
//www.ebi.ac.uk/emblGenome(EBI)
http:
//www.ebi.ac.uk/genomes/向EMBL数据库提交序列
http:
//www.ebi.ac.uk/embl/Submission/webin.htmlDDBJ
http:
//www.ddbj.nig.ac.jp/PlantRgenedatabase
http:
//www.ncgr.org/rgenes
启动子数据库
Eukaryoticpromoterdatabase
http:
//www.epd.isb-sib.ch
http:
//www.genome.ad.jp/dbget/dbget2.html
转录因子数据库 FRANSFAC
http:
//transfac.gbf.deooTFD
http:
//www.ifti.org 蛋白质数据库 SWISS-PROT或TrEMBL
http:
//www.ebi.ac.uk/swissprot/
http:
//www.expasy.ch/sprot/PIR
http:
//www-nbrf.georgetown.edu/pir/PRF
http:
//www.prf.or.jp/PDBSTR
http:
//www.genome.ad.jp/dbget-bin/wwwbfind?
pdbstr-todayProsite
http:
//www.expasy.ch/sprot/prosite.html
结构数据库 PDB
http:
//www.rcsb.org/pdb
http:
//www.pdb.orgNDB
http:
//ndbserver.rutgers.edu/NDB/ndb.html
http:
//ndbserver.rutgers.edu/DNA-BindingProteinDatabase
http:
//ndbserver.rutgers.edu/NDB/structure-finder/dnabind/index.htmlNMRNucleicAcidsDatabase
http:
//ndbserver.rutgers.edu/NDB/structure-finder/nmr/index.htmlProteinPlusDatabase
http:
//ndbserver.rutgers.edu/NDB/structure-finder/protein/index.htmlSwiss3Dimage
http:
//www.expasy.ch/sw3d/SCOP
http:
//scop.mrc-lmb.cam.ac.uk/scop/CATH
http:
//www.biochem.ucl.ac.uk/bsm/cath/ 酶、代谢和调控路径数据库 KEGG
http:
//www.genome.ad.jp/kegg/kegg2.htmlEnzymeNomenclatureDatabase
http:
//expasy.hcuge.ch/sprot/enzyme.htmlProteinKinaseResource(PKR)
http:
//www.sdsc.edu/kinases/LIGAND
http:
//www.genome.ad.jp/dbget/ligand.htmlWIT
http:
//www.cme.msu.edu/WIT/EcoCyc
http:
//ecocyc.PangeaSUM-BBD
http:
//www.labmed.umn.edu/umbbd/
多种代谢路径数据库
http:
//www.unl.edu/stc-95/ResTools/biotools/biotools8.html
基因调控路径数据库(TRANSPATH)
http:
//transfac.gbf.de
基因组数据库 日本水稻基因组数据库(RGP)
http:
//rgp.dna.affrc.go.jp华大水稻基因组框架图
欧洲水稻测序(第12染色体)
s.fr拟南芥基因组数据库
http:
//www.arabidopsis.orgUSDADatabase
http:
//www.nal.usda.gov/Demeter’sGenomes
http:
//genome.cornell.eduRiceGenes
http:
//genome.cornell.edu/cgi-bin/WebAce/webace?
db=ricegenesRiceBlastDB
http:
//genome.cornell.edu/cgi-bin/WebAce/webace?
db=riceblastdbFlyBase
http:
//flybase.bio.indiana.edu/.bin/fbidq.html?
FBgn0003075MouseGenomeInformatics
http:
//www.informatics.jax.org/bin/query_accession?
id=MGI:
97555SaccharomycesGenomeDatabase
http:
//genome-www.stanford.edu/cgi-bin/dbrun/SacchDB?
find+Locus+%22PGK1%22多种基因组数据库
http:
//www.hgmp.mrc.ac.uk/GenomeWeb 文献数据库 PubMed
http:
//www.ncbi.nlm.nih.gov/PubMed/OMIM
http:
//www.ncbi.nlm.nih.gov/Omim/Agricola
http:
//www.nal.usda.gov/ag98/
关键词为基础的数据库检索 Entrez
http:
//www.ncbi.nlm.nih.gov/Entrez/EntrezNucleotideSequenceSearch
http:
//www.ncbi.nlm.nih.gov/Entrez/nucleotide.htmlEntrezProteinSequenceSearch
http:
//www.ncbi.nlm.nih.gov/Entrez/protein.htmlBatchEntrez
http:
//www.ncbi.nlm.nih.gov/Entrez/batch.htmlSequenceRetrievalSystem,India
http:
//bioinfo.ernet.in:
80/srs5/SequenceRetrievalSystem,Singapore
http:
//www.bic.nus.edu.sg:
80/srs5/SequenceRetrievalSystem,US
http:
//iubio.bio.indiana.edu:
80/srs/srscSequenceRetrievalSystem,UK
http:
//srs.ebi.ac.uk/GetEntryNucleotide&ProteinSequenceSearch
http:
//ftp2.ddbj.nig.ac.jp:
8000/getstart-e.htmlDatabaseSearchwithKeyWords
http:
//ftp2.ddbj.nig.ac.jp:
8080/dbsearch-e-new.htmlDBGET/LinkDB
http:
//www.genome.ad.jp/dbget/dbget2.html
序列为基础的数据库检索 BLAST
http:
//www.ncbi.nlm.nih.gov/BLAST/FASTA
http:
//www2.ebi.ac.uk/fasta3/BLITZ
http:
//www2.ebi.ac.uk/bicsw/SSearch
rs.fr/bin/ssearch-guess.cgiElectronicPCR
http:
//www.ncbi.nlm.nih.gov/STS/Proteomeanalysis
http:
//www.ebi.ac.uk/proteome/
多序列分析 Clustalmultiplesequencealignment
http:
//dot.imgen.bcm.tmc.edu:
9331/multi-align/Options/clustalw.htmlBCM
http:
//dot.imgen.bcm.tmc.edu:
9331/multi-align/multi-align.htmlEBIClustalWanalysis
http:
//www.ebi.ac.uk 系谱分析 PAUP
http:
//onyx.si.edu/PAUP/EBIClustalWanalysis
http:
//www.ebi.ac.ukGCGpackage
PHYLIP
http:
//evolution.genetics.washington.edu/phylip.htmlMEGA/METREE
http:
//www.bio.psu.edu/imegHennig86
http:
//www.vims.edu/~mes/hennig/software.htmlGAMBIT
http:
//www.lifesci.ucla.edu/mcdbio/Faculty/Lake/Research/Programs/MacClade
http:
//phylogeny.arizona.edu/macclade/macclade.htmlPhylogeneticanalysis
http:
//www.unl.edu/stc-95/ResTools/biotools/biotools2.html
基因结构预测分析 GENSCAN
http:
//genes.mit.edu/GENSCAN.htmlGeneFinder
http:
//genomic.sanger.ac.uk/gf/gf.shtml
GeneFeatureSearches
http:
//dot.imgen.bcm.tmc.edu:
9331/Grail
http:
//compbio.ornl.gov/Grail-1.3/GrailEXP
http:
//grail.lsd.ornl.gov/grailexp/GeneMark
http:
//genemark.biology.gatech.edu/GeneMark/hmmchoice.htmlVeil
http:
//www.cs.jhu.edu/labs/compbio/veil.htmlAAT
http:
//genome.cs.mtu.edu/aat.htmlGENEID
http:
//www.imim.es/GeneIdentification/Geneid/geneid_input.htmlGenlang
http:
//cbil.humgen.upenn.edu/~sdong/genlang_home.htmlGeneParser
http:
//beagle.colorado.edu/~eesnyder/GeneParser.htmlGlimmer
http:
//www.cs.jhu.edu/labs/compbio/glimmer.htmlMZEF
http:
//www.cshl.org/genefinderProcrustes
http:
//www-hto.usc.edu/software/procrustes/
蛋白质结构预测分析 Expasy
http:
//www.expasy.ch/Predictingproteinsecondarystructure
http:
//dot.imgen.bcm.tmc.edu:
9331/pssprediction/pssp.htmlPredictingprotein3DStructures
http:
//dove.embl-heidelberg.de/3D/Predictingproteinstructures
http:
//dot.imgen.bcm.tmc.edu:
9331/seq-search/struc-predict.html
其它分析工具和软件 PutativeDNASequencingErrorsCheck
http:
//www.bork.embl-heidelberg.de/Frame/MatInspector
http:
//www.gsf.de/cgi-bin/matsearch.plFastM
http:
//www.gsf.de/cgi-bin/fastm.plWebSignalScan
http:
//www.dna.affrc.go.jp/htdocs/sigscan/signal.htmlBCMSearchLauncher
http:
//dot.imgen.bcm.tmc.edu:
9331/seq-util/seq-util.htmlWebcutter
TranslateDNAtoprotein
http:
//www.expasy.ch/tools/dna.htmlABIM
http:
//www-biol.univ-mrs.fr/english/logligne.htmlsequencemotifs:
Pfam
http:
//www.sanger.ac.uk/Pfam/
http:
//pfam.wustl.edu/ProDom
http:
//protein.toulouse.inra.fr/prodom.htmlPRINTS
http:
//www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS/
其它 多种数据库、分析工具和生物信息学机构
http:
//www.unl.edu/stc-95/Restools/biotools多种数据库和分析工具
http:
//www.ebi.ac.uk/Tools/Comparativesequenceanalysis
http:
//www.bork.embl-heidelberg.de/ 功能基因组分析 Transcriptionprofilingtechnologies
http:
//www.ncbi.nlm.nih.gov/ncicgap/expression_tech_info.htmlProtocolsforcDNAarraytechnology
http:
//cmgm.stanford.edu/pbrown/array.htmlDatamanagementandanalysisofgeneexpressionarrays
http:
//www.nhgri.nih.gov/DIR/LCG/15k/HTML/
Examplesofcommerciallyavailablefilterarrays:
GeneFiltersTM(ResearchGenetics)
GeneDiscoveryArrays(GenomeSystems)
AtlasTMArrays(CLONTECH)
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