PVY全基因组.docx
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PVY全基因组.docx
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PVY全基因组
>AB185833
LOCUSAB1858339698bpRNAlinearVRL12-MAR-2009
DEFINITIONPotatovirusYgenomicRNA,completegenome,isolate:
PVY-12.
ACCESSIONAB185833
VERSIONAB185833.2GI:
157679488
KEYWORDS.
SOURCEPotatovirusY
ORGANISMPotatovirusY
Viruses;ssRNApositive-strandviruses,noDNAstage;Potyviridae;
Potyvirus.
REFERENCE1
AUTHORSChikhAli,M.,Maoka,T.andNatsuaki,K.T.
TITLEApointmutationchangestheserotypeofapotatovirusYisolate;
genomicdeterminationoftheserotypeofPVYstrains
JOURNALVirusGenes35
(2),359-367(2007)
PUBMED17564823
REFERENCE2(bases1to9698)
AUTHORSChikhAli,M.S.,Maoka,T.andNatsuaki,K.T.
TITLEDirectSubmission
JOURNALSubmitted(27-JUL-2004)Contact:
MohamadSChikhAliLaboratoryof
PlantPathology,FacultyofAgriculture,UtsunomiyaUniversity;
Mine-machi350,Utsunomiya321-8505,Japan
COMMENTOnSep26,2007thissequenceversionreplacedgi:
154240660.
FEATURESLocation/Qualifiers
source1..9698
/organism="PotatovirusY"
/mol_type="genomicRNA"
/isolate="PVY-12"
/isolation_source="potato"
/db_xref="taxon:
12216"
/lab_host="Nicotianatabacumcv.Samsun"
/country="Syria:
Aleppo"
CDS185..9370
/codon_start=1
/product="polyproteinprecursor"
/protein_id="BAF74584.2"
/db_xref="GI:
157679489"
/translation="MATYMSTICFGSFECKLPYSPASCGHIVKEREVLASVDPFADLE
TQLSARLLKQEYATVRVLKNGTLTYRYKTDAQITRIQKKLERKDREEYHFQMAAPSIV
SKITIAGGEPPSKLESQVRRGVIHTTPRMRTAKTYHTPKLTEGQMNHLIKQVKQIMST
KGGSVQLISKKSTHVHYKEVLGSHRAVVCTAHMRGLRKRVDFRCDKWTVVRLQHLART
DKWNNQVRATDLRKGDSGVILSNTNLKGNFGRSSEGLFIVRGSHEGKIYDARSKVTQG
VMDSMVQFSSAESFWKGLDGNWAQMRYPTDHTCVAGLPVEDCGRVAAIMTHSILPCYK
ITCPTCAQQYANLPASDLLKILHKHASDGLNRLGADKDRFVHVKKFLTILEHLTEPVD
LSLEIFNEVFKSIGEKQQSPFKNLNILNNFFLKGKENTAREWQVAQLSLLELARFQKN
RTDNIKKGDISFFRNKLSAKANWNLYLSCDNQLDKNANFLWGQREYHAKRFFSNYFEE
IDPAKGYSAYENRLHPNGTRKLAIGNLIVPLDLAEFRRKVKGDYKRQPGVSKKCTSSK
DGNYVYPCCCTTLDDGSAVESTFYPPTKKHLVIGNSGDQKYVDLPKGNSEMLYIARQG
FCYINIFLAMLINISEEDAKDFTKKVRDMCVPKLGTWPTMMDLATTCAQMKIFYPDVH
DAELPRILVDHETQTCHVVDSFGSQTTGYHILKASSVSQLILFANDELESDIKHYRVG
GIPNACPELGSTISPFREGGVIMSESAALKLLLKGIFRPKVMRQLLLDEPYLLILSIL
SPGILMAMYNNGIFELAVRLWINEKQSIAMIASLLSALALRVSAAETLVAQRIIIDTA
ATDLLDATCDGFNLHLTYPTALMVLQVVKNRNECDDTLFKAGFPSYNTSVVQIMEKNY
LNLLNDAWKDLTWREKLSATWYSYRAKRSITRYIKPTGRADLKGLYNISPQAFLGRGA
QVVKGTASGLSERFNNYFNTKCVNISSFFIRRIFRRLPTFVTFVNSLLVISMLTSVVA
VCQAIILDQRKYRREIELMQIEKNEIVCMELYASLQRKLERDFTWDEYIEYLKSVNPQ
IVQFAQAQMEEYDVRHQRSTPGVKNLEQVVAFMALVIMVFDAERSDCVFKTLNKFKGV
LSSLDHEVRHQSLDDVIKNFDERNETIDFELSEDTIRTSSVLDTKFSDWWDRQIQMGH
TLPHYRTEGHFMEFTRATAVQVANDIAHSEHLDFLVRGAVGSGKSTGLPVHLSVAGSV
LLIEPTRPLAENVFKQLSSEPFFKKPTLRMRGNSIFGSSPISVMTSGFALHYFANNRS
QLAQFNFVIFDECHVLDPSAMAFRSLLSVYHQACKVLKVSATPVGREVEFTTQQPVKL
IVEDTLSFQSFVDAQGSKTNADVVQFGSNVLVYVSSYNEVDTLAKLLTDKNMMVTKVD
GRTMKHGCLEIVTKGTSARPHFVVATNIIENGVTLDIDVVVDFGLKVSPFLDIDNRSI
AYNKVSVSYGERIQRLGRVGRFKKGVALRIGHTEKGIIEIPSMIATEAALACFAYNLP
VMTGGVSTSLIGNCTVRQVKTMQQFELSPFFIQNFVAHDGSMHHVIHDILKKYKLRDC
MTPLCDQSIPYRASSTWLSVSEYERLGVALEIPKQVKIAFHIKEIPPKLHEMLWETVV
KYKDVCLFPSIRASSISKIAYTLRTDLFAIPRTLILVERLLEEERVKQSQFRSLIDEG
CSSMFSIVNLTNTLRARYAKDYTAENIQKLEKVRSQLKEFSNLDGSACEENLIKRYES
LQFVHHQAVTSLAKDLKLKGTWKKSLVAKDLIIAGAVAIGGIGLIYSWFTQSVETVSH
QGKTKSKRIQALKFRHARDKRAGFEIDNNDDTIEEFFGSAYRKKGKGKGTTVGMGKSS
RRFVNMYGFDPTEYSFIQFVDPLTGAQIEENVYADIRDIQERFSDVRKKMVEDDEIEL
QALGSNTTIHAYFRKDWSDKALKIDLMPHNPLKICDKSNGIAKFPERELELRQTGPAI
EVDVKDIPKQEVEHEAKSLMRGLRDFNPIAQTVCRVKVSVEYGTSEMYGFGFGAYIIV
NHHLFKSFNGSMEVRSMHGTFRVKNLHSLSVLPIKGRDIIIIKMPKDFPVFPQKLHFR
APVQNERICLVGTNFQEKHASSIITETSTTYNVPGSTFWKHWIETNDGHCGLPVVSTA
DGCLVGIHSLANNVQTTNYYSAFDEDFESKYLRTNEHNEWTKSWVYNPDTVLWGPLKL
KESTPKGLFKTTKLVQDLIDHDVVVEQAKHSAWMYEALTGNLQAVATMKSQLVTKHVV
KGECRHFKEFLSVDSEAEAFFRPLMDAYGKSLLNREAYIKDIMKYSKPIDVGIVDCDA
FEEAINRVIIYLQVHGFQKCNYITDEQEIFKALNMKAAVGAMYGGKKKDYFEHFTEAD
KEEIVMQSCLRLYKGSLGIWNGSLKAELRCKEKILANKTRTFTAAPLDTLLGGKVCVD
DFNNQFYSKNIECCWTVGMTKFYGGWDKLLRRLPENWVYCDADGSQFDSSLTPYLINA
VLIIRSTYMEDWDLGLQMLRNLYTEIIYTPISTPDGTIVKKFRGNNSGQPSTVVDNSL
MVVLAMHYALIKECVEFEEIDSTCVFFVNGDDLLIAVNPEKESILDRMSQHFSDLGLN
YDFSSRTRRKEELWFMSHRGLLIEGMYVPKLEEERIVSILQWDRADLPEHRLEAICAA
MIESWGYFELTHQIRRFYSWLLQQQPFSTIAQEGKAPYIASMALKKLYMDRTVDEEEL
KAFTEMMVALDDELECDTYEVHHQGNDTIDAGGSTKKDAKQEQGSIQPNLNKGKEKDV
NVGTSGTHTVPRIKAITSKMRMPKSKGATVLNLEHLLEYAPQQIDISNTRATQSQFDT
WYEAVQLAYDIGETEMPTVMNGLMVWCIENGTSPNINGVWVMMDGDEQVEYPLKPIVE
NAKPTLRQIMAHFSDVAEAYIEMRNKKEPYMPRYGLVRNLRDGSLARYAFDFYEVTSR
TPVRAREAHIQMKAAALKSAQSRLFGLDGGISTQEENTERHTTEDVSPSMHTLLGVKN
M"
aattaaaacaactcaatacaacataagaaaaacaacgcaaaaacactcataaacgcttattctcactcaagcaacttgctaagtttcagtttaaatcatttccttgcaattctcttgaacgatattggaaaccatttcaactcaacaagtaatttcatcacttccaaccaattttagatcttcaatggcaacttacatgtcaacaatctgtttcggttcgtttgaatgcaagctaccatactcacccgcctcttgcgggcatattgtgaaggaacgagaagtgctggcttccgttgatcctttcgcagatctggaaacacaacttagtgcacgattgctcaagcaagaatatgctactgttcgtgtgctcaagaacggtactcttacgtaccggtacaagactgatgcccagataacgcgcatccagaagaaactggaaaggaaggatagggaagaatatcacttccaaatggcagctcctagtattgtgtcaaagatcactattgctggtggagagccaccttcaaaacttgaatcacaagtgcggaggggtgtcatccacacaactccaaggatgcgcacagcaaaaacatatcacacgccaaagttgacagagggacaaatgaaccaccttatcaagcaggtgaagcaaattatgtcaaccaaaggagggtctgttcaactgattagcaagaaaagtacccatgttcactataaagaagttttgggatcacatcgcgcagttgtttgcactgcacatatgagaggtttacgaaagagagtggactttcggtgtgataaatggaccgttgtgcgtctacagcatctcgccaggacagacaagtggaataaccaagttcgtgctactgatctacgcaagggcgatagtggagttatattgagtaatactaatctcaaaggaaactttgggagaagctcggagggcctattcatagtgcgtgggtcgcacgaaggaaaaatctatgatgcacgttccaaggttactcaaggggttatggattcaatggttcagttctcaagcgctgaaagcttttggaagggattggacggcaattgggcacaaatgagatatcctacagatcatacatgtgtggcaggcttaccagttgaagactgcggcagagttgcagcgataatgacacacagtattttaccgtgctataagataacctgccctacctgtgcccaacaatatgccaacttgccagccagtgacttacttaagatattacacaagcacgcaagtgatggtttaaatcggttgggggcagacaaagatcgctttgtgcatgtcaaaaagttcttgacaatcttagagcacttaactgaaccggttgatctgagtctagaaattttcaatgaagtattcaagtctataggggagaagcaacaatcacctttcaaaaacctgaatattctgaataatttctttttgaaaggaaaggaaaatacagctcgtgaatggcaggtggctcaattaagcttacttgaattggcaagattccaaaagaacagaacggataatatcaagaaaggagacatctcgttctttaggaataaactatctgccaaagcaaattggaacttgtatctgtcatgtgataaccagctggataagaatgcaaacttcctgtggggacagagggaatatcatgctaagcgatttttctcgaactatttcgaggaaattgatccagcgaagggctattcagcatacgaaaatcgtttgcatccgaatgggacaagaaaacttgcaattggaaacctaattgtaccacttgatctggctgagtttaggcggaaggtgaaaggtgattataaaagacagccaggggtgagtaagaagtgcacgagctcgaaggatggaaactacgtgtatccctgttgttgcactacacttgatgatggctcagctgttgaatcaacattttacccgccaactaagaagcacctcgtaataggcaatagtggcgatcaaaagtatgttgacttaccaaaagggaattctgagatgttatatattgccaggcaaggtttctgttacattaacattttcctcgcgatgttgattaacattagtgaggaagatgcaaaggatttcactaagaaggttcgtgacatgtgtgtgccaaagcttggaacctggccaaccatgatggatctggctacaacttgtgctcaaatgaaaatattctaccctgatgttcatgatgcagaactgcctagaatactagtcgatcacgaaacgcagacatgccatgtggttgactcgtttggctcacaaacaactgggtatcatattttgaaagcatctagcgtgtcccaacttattttgtttgctaatgatgagttggagtctgacattaagcactatagagttggtggtattcctaatgcatgccctgaacttgggtctacaatatcacctttcagagaaggaggagttataatgtctgagtcggcagcgctgaaactgcttttgaagggaatttttagacctaaggtgatgagacagttgctgttagatgagccttacctgttgattctatcaatattatcccctggcatactgatggctatgtacaataatgggatttttgaacttgcggtaaggttgtggattaatgagaaacaatccatagctatgatagcatcgctactatcagctttagccctacgagtgtcagcggcagaaacactcgtcgcacagaggattataattgatactgcagctacagatctccttgatgctacgtgcgatgggttcaacctacatctaacgtaccccactgcgttgatggtgttgcaagttgttaagaatagaaatgaatgtgatgataccctattcaaggcgggttttccaagttacaacacgagcgtcgtacagatcatggaaaaaaattatctaaatctcttgaacgatgcttggaaagatttaacttggcgggaaaaattatccgcaacatggtactcatacagagcaaaacgctctatcactcggtacataaaacccacaggaagggcagatttgaaagggttatacaacatatcaccacaagcattcttgggccgaggcgcccaggtggtcaaaggcactgcctcaggattgagcgagcgatttaataattatttcaatactaagtgtgtaaatatttcatcctttttcattcgtagaatctttaggcgtttgccaactttcgtcacttttgttaactcattattagttattagtatgttaaccagcgtagtggcagtgtgtcaggcaataattttagatcagaggaagtataggagagaaatcgagttgatgcagatagagaagaatgagatcgtctgcatggagctatatgcaagtttacagcgcaaacttgaacgcgatttcacatgggatgagtacattgagtatttgaagtcagtaaaccctcagatagttcagtttgctcaagcgcagatggaagaatatgatgtgcgacaccagcgttccacaccaggtgttaaaaatttggaacaagtggtagcatttatggctttagtcatcatggtgttcgatgctgaaaggagtgattgcgtgttcaaaactctcaataaatttaagggtgtcctttcctcactggaccatgaagttagacatcagtccttagacgatgtaatcaagaattttgatgagaggaatgagactattgattttgaattgagtgaggacacaattcgaacatcatcagtgctagatacaaagtttagtgattggtgggaccgacaaatccagatgggtcatacacttccacattacagaaccgaggggcacttcatggagttcacaagagcaactgctgtccaagtggctaatgatatcgctcatagcgaacacctagactttctagtaaggggagctgttgggtctggaaagtcaactgggttgcctgttcatcttagtgtagccggatctgtgcttttaattgaaccaacgcgaccactagcggagaacgttttcaaacagctatctagtgaaccattcttcaagaagccaacactgcgtatgcgtggaaatagtatatttggctcttctccaatctccgtcatgactagcggatttgcgctacactacttcgccaataatcgctctcaattagctcagttcaactttgtgatatttgatgagtgccatgttctggatccttccgcaatggcgttccgcagtctgctgagtgtttatcatcaagcatgcaaagtgttaaaagtgtcagctactccagtaggaagagaggttgaatttacaacacagcaaccagtcaagttaatagtggaggacacactgtctttccaatcatttgttgatgcacaaggttctaaaactaatgctgatgttgttcagtttggttcaaacgtacttgtgtacgtgtcgagctacaatgaagttgacaccttggctaagctcctaacagacaagaatatgatggtcacaaaggttgatggcagaacaatgaagcacggttgcctagaaattgtcacaaaaggaaccagtgcgagaccacattttgttgtagcaaccaacataattgagaatggagtgactttggacatagacgtggttgtagattttgggttaaaagtctcaccgttcttggacattgacaataggagcattgcttacaataaggtgagtgttagctatggtgagagaattcaaaggctgggtcgtgttggacgcttcaagaaaggagtagcattgcgcattggacacactgagaagggaattattgaaattccaagcatgatcgctacagaggcggctcttgcttgctttgcatataacttgccagtgatgacaggaggcgtctcaactagtctgattggcaattgtactgtgcgccaagttaaaacaatgcagcaatttgaattgagtcccttctttatccagaatttcgttgcccacgatggatcaatgcatcatgtcatacatgacattcttaaaaagtataaacttcgagattgtatgacacctttgtgcgatcagtctataccatacagggcatcgagcacttggttatcggttagtgaatatgagcgacttggagtggccttagaaattccaaagcaagtcaaaattgcattccatatcaaagagatccctcctaagctccacgaaatgctttgggaaacggttgtcaagtacaaagacgtttgcttatttccaagcattcgagcatcgtccatcagcaaaatcgcatacacattgcgtacagacctcttcgccatcccaagaactctaatattggtggagagactgcttgaagaggagcgagtgaagcagagccaattcagaagtctcatcgacgaaggatgctcaagcatgttttcgattgtcaacttgacaaacactctcagagctagatatgcaaaagattacaccg
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- PVY 基因组